PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g016780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 172aa    MW: 18846.1 Da    PI: 7.6624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g016780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-054062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F ++  L  H++ H
  Csa13g016780.1 40 FPCQYCPRKFYTSQALGGHQNAH 62
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-63767No hitNo description
PROSITE profilePS5015711.0534067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAEPPPSYHH FVGPSKPRSS SKRHSFSSSS GTHQTCHRLF PCQYCPRKFY TSQALGGHQN  60
AHKRERAAAR RNLGVLSHSP PILDDTTTFL RHPYPCFYPN QMQGPSSPSG IGPGHEQTAM  120
MMTMGGSGGG YDPFPYPYVY PFGLSGSNDG NGVMMEEDEP LDLDLDLSLR L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453508.11e-124PREDICTED: zinc finger protein KNUCKLES-like
SwissprotQ9FFX45e-65KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLR0HAN85e-76R0HAN8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__1363__AT5G14010.17e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-43C2H2 family protein